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Nabeel-Shah, S. et al. SARS-CoV-2 nucleocapsid protein attenuates stress granule formation and alters gene expression via direct interaction with host mRNAs. Cold Spring Harb. Lab. https://doi.org/10.1101/2020.10.23.342113 (2020).

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Rescuing Z + agrin splicing in Nova null mice restores synapse formation and unmasks a physiologic defect in motor neuron firing. Proc Natl Acad Sci 106: 3513–3518. [ PMC free article] [ PubMed] [ Google Scholar] Differential 3′ processing of specific transcripts expands regulatory and protein diversity across neuronal cell types. bioRxiv

Kutluay, S. B. et al. Global changes in the RNA binding specificity of HIV-1 gag regulate virion genesis. Cell 159, 1096–1109 (2014). Single-nucleotide-resolution mapping of m 6A and m 6Am throughout the transcriptome. Nat Methods 12: 767–772. [ PMC free article] [ PubMed] [ Google Scholar] A majority of m 6A residues are in the last exons, allowing the potential for 3′ UTR regulation. Genes Dev 29: 2037–2053. [ PMC free article] [ PubMed] [ Google Scholar] Argonaute CLIP defines a deregulated miR-122-bound transcriptome that correlates with patient survival in human liver cancer. Mol Cell 67: 400–410.e7. [ PMC free article] [ PubMed] [ Google Scholar] Benhalevy, D., Anastasakis, D. G. & Hafner, M. Proximity-CLIP provides a snapshot of protein-occupied RNA elements in subcellular compartments. Nat. Methods 15, 1074–1082 (2018). In this study, subcellular compartment-specific proximity labelling is combined with CLIP to monitor RNA–protein interactions at specific locations in the cell.

CLIP and complementary methods | Nature Reviews Methods Primers CLIP and complementary methods | Nature Reviews Methods Primers

Brannan, K. et al. Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes. Preprint at Research Square https://doi.org/10.21203/rs.3.rs-87224/v1 (2020). By default, text in Google Sheets is set to overflow. So if you need to unwrap text, you would simply choose "Overflow" in the text wrapping options. Lin, C. & Miles, W. O. Beyond CLIP: advances and opportunities to measure RBP–RNA and RNA–RNA interactions. Nucleic Acids Res. 47, 5490–5501 (2019). Flynn, R. A. et al. Systematic discovery and functional interrogation of SARS-CoV-2 viral RNA–host protein interactions during infection. Preprint at bioRxiv https://doi.org/10.1101/2020.10.06.327445 (2020). Mukherjee, N. et al. Deciphering human ribonucleoprotein regulatory networks. Nucleic Acids Res. 47, 570–581 (2019). This study produces 114 PAR-CLIP experiments for 64 RBPs in the HEK cell line, and presents a comparative analysis of these RBPs.Drewe-Boss, P., Wessels, H.-H. & Ohler, U. omniCLIP: probabilistic identification of protein–RNA interactions from CLIP-seq data. Genome Biol. 19, 183 (2018). It may seem obvious, but if the columns are wide enough to fit the text, the text will not overflow into the cells beside it. If needed, narrow your columns.